Oh ok. I've been using EFI Live and TunerPro up to this point and they never had anything to change the firing order. As I said HP tuners is still on its way to me so I haven't had a play around yet.
Regardless I did it the long way and repinned everything.
Is it possible the PCM needs the CASE relearn procedure. From what I remember reading it is supposed to sync the cam and crank sensors yes? But only works if they're already within 2degrees?
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