There's no real documentation for dual ECMs like you're trying to do. The only dual ECM engines I know of run each half of the engine COMPLETELY independent of one another. The ONLY common part is the crack, which each half of the engine just happens to share. Those ECMs are also designed with this setup in mind. The ECMs you are using are not.
On the bench is one thing, where signals and conditions are perfect, it's a very different thing on a running engine where syncing of each set of cylinders will a nightmare.
What you're trying to do is just over complicating the situation simply for the sake of over complicating it.
I ask again; Why have you not tried to use a single ECM? I think you'll be pleasantly surprised that it will likely work right with the right ignition module that takes into account the odd fire.
As I have already said the ECMs will not be in sync and when one ECM, sees an out of spec condition it will throw a code, our worse go into LHM. It won't take much for this to happen, a simple command in idle RPM change that it's not seen will cause the ECM to start doing other things, like changing spark timing to further compensate, which will then make the engine fight itself.
I just think you're over complicating what needs to Hadrian and there are far better ways to put EFI on an odd fire engine.
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