Hello all, I am fairly new to the world of tuning and had a question regarding XDF and bin setups. I have a nice XDF and Bin for my ECU and deleted VATS quickly (keeping stock tune for now as there is no change to the cam or anything)

My question is this, I am doing a T56 swap behind an iron 5.3, in TunerPro it advises me not to change trans setup- I am assuming this is the case if I had a different automatic trans, am I OK with a manual swap?

I wanted to confirm with someone wiser than I before I brick something!